GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe3G113300 [ Aqcoe3G113300]	Chr_03	7615711	7622774	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe3G113300.1 Aqcoe3G113300.1	High	No	832	OG0016891		Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -24.399 AMFE: -0.657 GC content %: 37.139
Acoerulea_Aqcoe3G113300.2 Aqcoe3G113300.2	High	No	769	OG0016891		Get ORF Coding potential... Type: noncoding Potential: -0.768 Folding energies... MFEI: -23.966 AMFE: -0.625 GC content %: 38.362
Acoerulea_Aqcoe3G113300.3 Aqcoe3G113300.3	High	No	616	OG0016891		Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -23.620 AMFE: -0.604 GC content %: 39.123
Acoerulea_Aqcoe3G113300.4 Aqcoe3G113300.4	High	No	561	OG0026587		Get ORF Coding potential... Type: noncoding Potential: -0.677 Folding energies... MFEI: -23.815 AMFE: -0.610 GC content %: 39.037
Acoerulea_Aqcoe3G113300.5 Aqcoe3G113300.5	High	No	555	OG0026587		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -23.063 AMFE: -0.621 GC content %: 37.117

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).