GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe3G114700 [ Aqcoe3G114700]	Chr_03	7717750	7721706	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe3G114700.2 Aqcoe3G114700.2	High	No	1039	OG0026588		Get ORF Coding potential... Type: noncoding Potential: -0.799 Folding energies... MFEI: -25.265 AMFE: -0.682 GC content %: 37.055
Acoerulea_Aqcoe3G114700.3 Aqcoe3G114700.3	High	No	947	OG0026588		Get ORF Coding potential... Type: noncoding Potential: -0.778 Folding energies... MFEI: -25.744 AMFE: -0.675 GC content %: 38.120

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).