GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe3G149000 [ Aqcoe3G149000]	Chr_03	12092784	12103124	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe3G149000.1 Aqcoe3G149000.1	High	No	692	OG0026591		Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -24.991 AMFE: -0.678 GC content %: 36.850
Acoerulea_Aqcoe3G149000.2 Aqcoe3G149000.2	High	No	495	OG0026591		Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -22.970 AMFE: -0.632 GC content %: 36.364

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).