GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe3G213400 [ Aqcoe3G213400]	Chr_03	24263750	24267987	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe3G213400.2 Aqcoe3G213400.2	High	No	497	OG0016895		Get ORF Coding potential... Type: noncoding Potential: -0.549 Folding energies... MFEI: -23.823 AMFE: -0.569 GC content %: 41.851
Acoerulea_Aqcoe3G213400.3 Aqcoe3G213400.3	Low	No	588	OG0016895		Get ORF Coding potential... Type: noncoding Potential: -0.598 Folding energies... MFEI: -23.827 AMFE: -0.574 GC content %: 41.497
Acoerulea_Aqcoe3G213400.4 Aqcoe3G213400.4	High	No	392	OG0016895		Get ORF Coding potential... Type: noncoding Potential: -0.529 Folding energies... MFEI: -25.077 AMFE: -0.592 GC content %: 42.347

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Acoerulea_Aqcoe3G213400.3	SwissProt	2021-04-01	Q5N800	5.96e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).