Acoerulea Aqcoe3G216800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe3G216800 [ Aqcoe3G216800] |
Chr_03 | 25099041 | 25101171 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe3G216800.1 Aqcoe3G216800.1 |
Low | No | 1478 | OG0007152 | Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -25.149 AMFE: -0.687 GC content %: 36.604 | |
| Acoerulea_Aqcoe3G216800.2 Aqcoe3G216800.2 |
Low | No | 1358 | OG0007152 | Get ORF Coding potential... Type: noncoding Potential: -0.036 Folding energies... MFEI: -24.521 AMFE: -0.671 GC content %: 36.524 | |
| Acoerulea_Aqcoe3G216800.3 Aqcoe3G216800.3 |
Low | No | 835 | OG0007152 | Get ORF Coding potential... Type: noncoding Potential: -0.203 Folding energies... MFEI: -25.138 AMFE: -0.666 GC content %: 37.725 | |
| Acoerulea_Aqcoe3G216800.4 Aqcoe3G216800.4 |
Low | No | 955 | OG0007152 | Get ORF Coding potential... Type: noncoding Potential: -0.216 Folding energies... MFEI: -26.126 AMFE: -0.693 GC content %: 37.696 | |
| Acoerulea_Aqcoe3G216800.6 Aqcoe3G216800.6 |
Low | No | 438 | OG0007152 | Get ORF Coding potential... Type: noncoding Potential: -0.007 Folding energies... MFEI: -26.758 AMFE: -0.620 GC content %: 43.151 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Acoerulea_Aqcoe3G216800.2 | SwissProt | 2021-04-01 | P34106 | 1.41e-14 |
| Acoerulea_Aqcoe3G216800.3 | SwissProt | 2021-04-01 | Q9LDV4 | 3.65e-15 |
| Acoerulea_Aqcoe3G216800.4 | SwissProt | 2021-04-01 | Q9LDV4 | 4.45e-15 |
| Acoerulea_Aqcoe3G216800.6 | SwissProt | 2021-04-01 | P34106 | 5.88e-18 |
| Acoerulea_Aqcoe3G216800.1 | SwissProt | 2021-04-01 | P34106 | 1.57e-14 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
