GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe3G316700 [ Aqcoe3G316700]	Chr_03	35302424	35304921	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe3G316700.2 Aqcoe3G316700.2	High	No	801	OG0026619		Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -25.718 AMFE: -0.632 GC content %: 40.699
Acoerulea_Aqcoe3G316700.3 Aqcoe3G316700.3	High	No	587	OG0026619		Get ORF Coding potential... Type: noncoding Potential: -0.690 Folding energies... MFEI: -28.433 AMFE: -0.652 GC content %: 43.612

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).