GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe4G004500 [ Aqcoe4G004500]	Chr_04	371091	374414	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe4G004500.2 Aqcoe4G004500.2	High	No	751	OG0026624		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -20.493 AMFE: -0.544 GC content %: 37.683
Acoerulea_Aqcoe4G004500.3 Aqcoe4G004500.3	High	No	840	OG0026624		Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -20.595 AMFE: -0.558 GC content %: 36.905

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).