GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe4G027500 [ Aqcoe4G027500]	Chr_04	2369135	2371094	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe4G027500.1 Aqcoe4G027500.1	High	No	946	OG0026627		Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -22.812 AMFE: -0.590 GC content %: 38.689
Acoerulea_Aqcoe4G027500.2 Aqcoe4G027500.2	High	No	1732	OG0026627		Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -25.485 AMFE: -0.675 GC content %: 37.760

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).