Acoerulea Aqcoe4G082400

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Acoerulea_Aqcoe4G082400
[ Aqcoe4G082400]
Chr_04 8001997 8008473 v3.1 Aquilegia coerulea (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Acoerulea_Aqcoe4G082400.1
Aqcoe4G082400.1
Low No 696 OG0085640
Coding potential...
Type: noncoding Potential: -0.579
Folding energies...
MFEI: -20.905 AMFE: -0.545
GC content
%: 38.362


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Acoerulea_Aqcoe4G082400.1  SwissProt 2021-04-01 Q93ZJ3 4.04e-9


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Acoerulea_Aqcoe4G082400.png