GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe4G085400 [ Aqcoe4G085400]	Chr_04	8320766	8324162	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe4G085400.1 Aqcoe4G085400.1	High	No	2018	OG0007154		Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -26.194 AMFE: -0.708 GC content %: 37.017
Acoerulea_Aqcoe4G085400.2 Aqcoe4G085400.2	High	No	1000	OG0007154		Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -27.440 AMFE: -0.679 GC content %: 40.400
Acoerulea_Aqcoe4G085400.3 Aqcoe4G085400.3	High	No	1986	OG0007154		Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -26.667 AMFE: -0.711 GC content %: 37.513
Acoerulea_Aqcoe4G085400.4 Aqcoe4G085400.4	High	No	1038	OG0007154		Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -28.015 AMFE: -0.692 GC content %: 40.462
Acoerulea_Aqcoe4G085400.5 Aqcoe4G085400.5	High	No	1008	OG0007154		Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -28.780 AMFE: -0.709 GC content %: 40.575

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).