Acoerulea Aqcoe4G117300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe4G117300 [ Aqcoe4G117300] |
Chr_04 | 12947813 | 12952195 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe4G117300.1 Aqcoe4G117300.1 |
High | No | 723 | OG0007156 | Get ORF Coding potential... Type: noncoding Potential: -0.686 Folding energies... MFEI: -21.936 AMFE: -0.558 GC content %: 39.281 | |
| Acoerulea_Aqcoe4G117300.2 Aqcoe4G117300.2 |
High | No | 644 | OG0007156 | Get ORF Coding potential... Type: noncoding Potential: -0.652 Folding energies... MFEI: -25.280 AMFE: -0.651 GC content %: 38.820 | |
| Acoerulea_Aqcoe4G117300.3 Aqcoe4G117300.3 |
High | No | 640 | OG0007156 | Get ORF Coding potential... Type: noncoding Potential: -0.650 Folding energies... MFEI: -24.844 AMFE: -0.641 GC content %: 38.750 | |
| Acoerulea_Aqcoe4G117300.4 Aqcoe4G117300.4 |
High | No | 533 | OG0007156 | Get ORF Coding potential... Type: noncoding Potential: -0.751 Folding energies... MFEI: -22.608 AMFE: -0.579 GC content %: 39.024 | |
| Acoerulea_Aqcoe4G117300.5 Aqcoe4G117300.5 |
Low | No | 669 | OG0007156 | Get ORF Coding potential... Type: noncoding Potential: -0.663 Folding energies... MFEI: -20.894 AMFE: -0.573 GC content %: 36.472 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Acoerulea_Aqcoe4G117300.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/RTE-BovB |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
