GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe4G123900 [ Aqcoe4G123900]	Chr_04	14305116	14306267	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe4G123900.1 Aqcoe4G123900.1	High	No	818	OG0026636		Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -23.545 AMFE: -0.666 GC content %: 35.330
Acoerulea_Aqcoe4G123900.2 Aqcoe4G123900.2	High	No	696	OG0026636		Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -22.586 AMFE: -0.634 GC content %: 35.632

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).