GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe4G191900 [ Aqcoe4G191900]	Chr_04	27990076	27994760	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe4G191900.2 Aqcoe4G191900.2	High	No	591	OG0007151		Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -25.787 AMFE: -0.632 GC content %: 40.778
Acoerulea_Aqcoe4G191900.3 Aqcoe4G191900.3	High	No	800	OG0007151		Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -24.387 AMFE: -0.614 GC content %: 39.750
Acoerulea_Aqcoe4G191900.4 Aqcoe4G191900.4	High	No	866	OG0007151		Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -24.203 AMFE: -0.609 GC content %: 39.723

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).