GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe4G224400 [ Aqcoe4G224400]	Chr_04	35694309	35700247	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe4G224400.2 Aqcoe4G224400.2	High	No	1023	OG0026658		Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -24.682 AMFE: -0.530 GC content %: 46.530
Acoerulea_Aqcoe4G224400.3 Aqcoe4G224400.3	High	No	586	OG0026658		Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -21.911 AMFE: -0.514 GC content %: 42.662

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).