GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe4G226300 [ Aqcoe4G226300]	Chr_04	36175145	36177779	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe4G226300.1 Aqcoe4G226300.1	High	No	298	OG0002430		Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -21.007 AMFE: -0.574 GC content %: 36.577
Acoerulea_Aqcoe4G226300.2 Aqcoe4G226300.2	High	No	263	OG0002430		Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -25.019 AMFE: -0.604 GC content %: 41.445

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).