GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe5G227500 [ Aqcoe5G227500]	Chr_05	14762778	14763612	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe5G227500.1 Aqcoe5G227500.1	High	No	659	OG0007158		Get ORF Coding potential... Type: noncoding Potential: -0.731 Folding energies... MFEI: -22.428 AMFE: -0.640 GC content %: 35.053
Acoerulea_Aqcoe5G227500.2 Aqcoe5G227500.2	High	No	558	OG0007158		Get ORF Coding potential... Type: noncoding Potential: -0.776 Folding energies... MFEI: -24.014 AMFE: -0.660 GC content %: 36.380

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).