GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe5G252300 [ Aqcoe5G252300]	Chr_05	17665496	17665912	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe5G252300.1 Aqcoe5G252300.1	High	No	387	OG0026679		Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -28.036 AMFE: -0.562 GC content %: 49.871
Acoerulea_Aqcoe5G252300.2 Aqcoe5G252300.2	High	No	357	OG0026679		Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -27.003 AMFE: -0.548 GC content %: 49.300

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).