Acoerulea Aqcoe5G261200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe5G261200 [ Aqcoe5G261200] |
Chr_05 | 19152713 | 19165081 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe5G261200.2 Aqcoe5G261200.2 |
High | No | 646 | OG0007159 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -23.189 AMFE: -0.619 GC content %: 37.461 | |
| Acoerulea_Aqcoe5G261200.3 Aqcoe5G261200.3 |
Low | No | 655 | OG0007159 | Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -23.298 AMFE: -0.623 GC content %: 37.405 | |
| Acoerulea_Aqcoe5G261200.4 Aqcoe5G261200.4 |
High | No | 451 | OG0007159 | Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -24.080 AMFE: -0.575 GC content %: 41.907 | |
| Acoerulea_Aqcoe5G261200.5 Aqcoe5G261200.5 |
High | No | 1020 | OG0007159 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -23.784 AMFE: -0.645 GC content %: 36.863 | |
| Acoerulea_Aqcoe5G261200.6 Aqcoe5G261200.6 |
Low | No | 382 | OG0007159 | Get ORF Coding potential... Type: noncoding Potential: -0.678 Folding energies... MFEI: -25.524 AMFE: -0.625 GC content %: 40.838 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Acoerulea_Aqcoe5G261200.6 | SwissProt | 2021-04-01 | Q9D8C3 | 8.54e-5 |
| Acoerulea_Aqcoe5G261200.3 | SwissProt | 2021-04-01 | Q9D8C3 | 2.29e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
