GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe5G291300 [ Aqcoe5G291300]	Chr_05	24504583	24508765	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe5G291300.2 Aqcoe5G291300.2	High	No	1085	OG0026682		Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -28.065 AMFE: -0.668 GC content %: 42.028
Acoerulea_Aqcoe5G291300.3 Aqcoe5G291300.3	High	No	857	OG0026682		Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -28.623 AMFE: -0.667 GC content %: 42.940

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).