GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe5G319700 [ Aqcoe5G319700]	Chr_05	30865137	30866502	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe5G319700.1 Aqcoe5G319700.1	High	No	740	OG0026685		Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -24.851 AMFE: -0.654 GC content %: 37.973
Acoerulea_Aqcoe5G319700.2 Aqcoe5G319700.2	High	No	644	OG0026685		Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -26.289 AMFE: -0.677 GC content %: 38.820

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).