GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe5G419500 [ Aqcoe5G419500]	Chr_05	40669906	40672262	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe5G419500.1 Aqcoe5G419500.1	Low	No	1968	OG0007162		Get ORF Coding potential... Type: coding Potential: 0.027 Folding energies... MFEI: -25.178 AMFE: -0.626 GC content %: 40.193
Acoerulea_Aqcoe5G419500.2 Aqcoe5G419500.2	Low	No	1647	OG0007162		Get ORF Coding potential... Type: coding Potential: 0.075 Folding energies... MFEI: -24.706 AMFE: -0.617 GC content %: 40.073
Acoerulea_Aqcoe5G419500.3 Aqcoe5G419500.3	Low	No	1521	OG0007162		Get ORF Coding potential... Type: coding Potential: 0.166 Folding energies... MFEI: -25.233 AMFE: -0.616 GC content %: 40.960
Acoerulea_Aqcoe5G419500.4 Aqcoe5G419500.4	Low	No	1733	OG0007162		Get ORF Coding potential... Type: coding Potential: 0.873 Folding energies... MFEI: -25.436 AMFE: -0.618 GC content %: 41.143
Acoerulea_Aqcoe5G419500.5 Aqcoe5G419500.5	Low	No	1858	OG0007162		Get ORF Coding potential... Type: coding Potential: 0.030 Folding energies... MFEI: -24.989 AMFE: -0.620 GC content %: 40.312

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).