Acoerulea Aqcoe6G241100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe6G241100 [ Aqcoe6G241100] |
Chr_06 | 20885190 | 20888307 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe6G241100.1 Aqcoe6G241100.1 |
High | No | 819 | OG0007163 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -21.647 AMFE: -0.572 GC content %: 37.851 | |
| Acoerulea_Aqcoe6G241100.2 Aqcoe6G241100.2 |
High | No | 651 | OG0007163 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -24.562 AMFE: -0.625 GC content %: 39.324 | |
| Acoerulea_Aqcoe6G241100.3 Aqcoe6G241100.3 |
High | No | 689 | OG0007163 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -24.165 AMFE: -0.601 GC content %: 40.203 | |
| Acoerulea_Aqcoe6G241100.4 Aqcoe6G241100.4 |
High | No | 806 | OG0007163 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -22.035 AMFE: -0.571 GC content %: 38.586 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
