GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe7G031900 [ Aqcoe7G031900]	Chr_07	1904415	1906334	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe7G031900.6 Aqcoe7G031900.6	High	No	1158	OG0026713		Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -26.028 AMFE: -0.645 GC content %: 40.328
Acoerulea_Aqcoe7G031900.7 Aqcoe7G031900.7	Low	No	1370	OG0026713		Get ORF Coding potential... Type: noncoding Potential: -0.400 Folding energies... MFEI: -25.387 AMFE: -0.659 GC content %: 38.540

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Acoerulea_Aqcoe7G031900.7	RepBase (RepeatMasker)	2014-01-31	LTR/ERV1

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).