GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe7G104600 [ Aqcoe7G104600]	Chr_07	6331859	6335019	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe7G104600.1 Aqcoe7G104600.1	High	No	1450	OG0016919		Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -25.924 AMFE: -0.629 GC content %: 41.241
Acoerulea_Aqcoe7G104600.2 Aqcoe7G104600.2	High	No	744	OG0016919		Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -26.183 AMFE: -0.601 GC content %: 43.548
Acoerulea_Aqcoe7G104600.3 Aqcoe7G104600.3	High	No	684	OG0016919		Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -22.968 AMFE: -0.586 GC content %: 39.181

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).