GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe7G147600 [ Aqcoe7G147600]	Chr_07	9583549	9584698	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe7G147600.2 Aqcoe7G147600.2	High	No	661	OG0026720		Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -19.985 AMFE: -0.539 GC content %: 37.065
Acoerulea_Aqcoe7G147600.3 Aqcoe7G147600.3	High	No	501	OG0026720		Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -20.319 AMFE: -0.527 GC content %: 38.523

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).