GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe7G183700 [ Aqcoe7G183700]	Chr_07	13205249	13210165	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe7G183700.1 Aqcoe7G183700.1	High	No	931	OG0016920		Get ORF Coding potential... Type: noncoding Potential: -0.390 Folding energies... MFEI: -23.298 AMFE: -0.644 GC content %: 36.198
Acoerulea_Aqcoe7G183700.2 Aqcoe7G183700.2	High	No	863	OG0016920		Get ORF Coding potential... Type: noncoding Potential: -0.371 Folding energies... MFEI: -21.657 AMFE: -0.603 GC content %: 35.921
Acoerulea_Aqcoe7G183700.3 Aqcoe7G183700.3	High	No	881	OG0016920		Get ORF Coding potential... Type: noncoding Potential: -0.376 Folding energies... MFEI: -21.430 AMFE: -0.590 GC content %: 36.322

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).