Acoerulea Aqcoe7G222000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe7G222000 [ Aqcoe7G222000] |
Chr_07 | 19215714 | 19218517 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe7G222000.15 Aqcoe7G222000.15 |
Low | No | 946 | OG0001606 | Get ORF Coding potential... Type: noncoding Potential: -0.083 Folding energies... MFEI: -22.791 AMFE: -0.649 GC content %: 35.095 | |
| Acoerulea_Aqcoe7G222000.16 Aqcoe7G222000.16 |
Low | No | 941 | OG0001606 | Get ORF Coding potential... Type: noncoding Potential: -0.064 Folding energies... MFEI: -22.976 AMFE: -0.655 GC content %: 35.069 | |
| Acoerulea_Aqcoe7G222000.17 Aqcoe7G222000.17 |
Low | No | 988 | OG0001606 | Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -22.763 AMFE: -0.654 GC content %: 34.818 | |
| Acoerulea_Aqcoe7G222000.2 Aqcoe7G222000.2 |
Low | No | 1054 | OG0001606 | Get ORF Coding potential... Type: noncoding Potential: -0.008 Folding energies... MFEI: -20.266 AMFE: -0.616 GC content %: 32.922 | |
| Acoerulea_Aqcoe7G222000.23 Aqcoe7G222000.23 |
Low | No | 986 | OG0001606 | Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -23.844 AMFE: -0.649 GC content %: 36.714 | |
| Acoerulea_Aqcoe7G222000.3 Aqcoe7G222000.3 |
Low | No | 1199 | OG0001606 | Get ORF Coding potential... Type: noncoding Potential: -0.178 Folding energies... MFEI: -21.076 AMFE: -0.621 GC content %: 33.945 | |
| Acoerulea_Aqcoe7G222000.4 Aqcoe7G222000.4 |
Low | No | 1163 | OG0001606 | Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -21.006 AMFE: -0.617 GC content %: 34.050 | |
| Acoerulea_Aqcoe7G222000.5 Aqcoe7G222000.5 |
Low | No | 1210 | OG0001606 | Get ORF Coding potential... Type: noncoding Potential: -0.182 Folding energies... MFEI: -20.909 AMFE: -0.617 GC content %: 33.884 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Acoerulea_Aqcoe7G222000.4 | SwissProt | 2021-04-01 | Q9CAA9 | 8.16e-13 |
| Acoerulea_Aqcoe7G222000.16 | SwissProt | 2021-04-01 | Q9CAA9 | 7.54e-13 |
| Acoerulea_Aqcoe7G222000.5 | SwissProt | 2021-04-01 | Q9CAA9 | 9.26e-13 |
| Acoerulea_Aqcoe7G222000.17 | SwissProt | 2021-04-01 | Q9CAA9 | 9.19e-13 |
| Acoerulea_Aqcoe7G222000.2 | SwissProt | 2021-04-01 | Q9CAA9 | 1.41e-12 |
| Acoerulea_Aqcoe7G222000.23 | SwissProt | 2021-04-01 | Q9CAA9 | 9.08e-13 |
| Acoerulea_Aqcoe7G222000.3 | SwissProt | 2021-04-01 | Q9CAA9 | 8.98e-13 |
| Acoerulea_Aqcoe7G222000.15 | SwissProt | 2021-04-01 | Q9CAA9 | 3.85e-13 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
