Acoerulea Aqcoe7G225000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe7G225000 [ Aqcoe7G225000] |
Chr_07 | 20237022 | 20248910 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe7G225000.1 Aqcoe7G225000.1 |
Low | No | 2221 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.149 Folding energies... MFEI: -28.253 AMFE: -0.796 GC content %: 35.480 | |
| Acoerulea_Aqcoe7G225000.10 Aqcoe7G225000.10 |
Low | No | 1280 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.092 Folding energies... MFEI: -23.156 AMFE: -0.631 GC content %: 36.719 | |
| Acoerulea_Aqcoe7G225000.11 Aqcoe7G225000.11 |
Low | No | 1421 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.112 Folding energies... MFEI: -23.364 AMFE: -0.641 GC content %: 36.453 | |
| Acoerulea_Aqcoe7G225000.12 Aqcoe7G225000.12 |
Low | No | 1726 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -23.418 AMFE: -0.611 GC content %: 38.297 | |
| Acoerulea_Aqcoe7G225000.13 Aqcoe7G225000.13 |
Low | No | 1721 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.132 Folding energies... MFEI: -23.486 AMFE: -0.612 GC content %: 38.350 | |
| Acoerulea_Aqcoe7G225000.14 Aqcoe7G225000.14 |
Low | No | 1632 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.125 Folding energies... MFEI: -23.382 AMFE: -0.616 GC content %: 37.929 | |
| Acoerulea_Aqcoe7G225000.15 Aqcoe7G225000.15 |
Low | No | 1636 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.125 Folding energies... MFEI: -23.325 AMFE: -0.614 GC content %: 37.958 | |
| Acoerulea_Aqcoe7G225000.16 Aqcoe7G225000.16 |
Low | No | 1660 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.127 Folding energies... MFEI: -23.096 AMFE: -0.602 GC content %: 38.373 | |
| Acoerulea_Aqcoe7G225000.17 Aqcoe7G225000.17 |
Low | No | 2059 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.132 Folding energies... MFEI: -23.371 AMFE: -0.672 GC content %: 34.774 | |
| Acoerulea_Aqcoe7G225000.18 Aqcoe7G225000.18 |
Low | No | 2055 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.132 Folding energies... MFEI: -23.416 AMFE: -0.674 GC content %: 34.745 | |
| Acoerulea_Aqcoe7G225000.2 Aqcoe7G225000.2 |
Low | No | 2217 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.149 Folding energies... MFEI: -28.304 AMFE: -0.798 GC content %: 35.453 | |
| Acoerulea_Aqcoe7G225000.3 Aqcoe7G225000.3 |
Low | No | 2080 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -28.577 AMFE: -0.803 GC content %: 35.577 | |
| Acoerulea_Aqcoe7G225000.4 Aqcoe7G225000.4 |
Low | No | 2076 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -28.632 AMFE: -0.805 GC content %: 35.549 | |
| Acoerulea_Aqcoe7G225000.5 Aqcoe7G225000.5 |
Low | No | 1610 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.137 Folding energies... MFEI: -23.832 AMFE: -0.651 GC content %: 36.584 | |
| Acoerulea_Aqcoe7G225000.6 Aqcoe7G225000.6 |
Low | No | 1931 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.147 Folding energies... MFEI: -29.803 AMFE: -0.839 GC content %: 35.526 | |
| Acoerulea_Aqcoe7G225000.7 Aqcoe7G225000.7 |
Low | No | 2072 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -29.373 AMFE: -0.829 GC content %: 35.425 | |
| Acoerulea_Aqcoe7G225000.8 Aqcoe7G225000.8 |
Low | No | 1204 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.093 Folding energies... MFEI: -23.239 AMFE: -0.620 GC content %: 37.458 | |
| Acoerulea_Aqcoe7G225000.9 Aqcoe7G225000.9 |
Low | No | 1345 | OG0000570 | Get ORF Coding potential... Type: noncoding Potential: -0.102 Folding energies... MFEI: -23.375 AMFE: -0.630 GC content %: 37.100 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Acoerulea_Aqcoe7G225000.11 | SwissProt | 2021-04-01 | Q9ZW02 | 4.85e-13 |
| Acoerulea_Aqcoe7G225000.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Acoerulea_Aqcoe7G225000.5 | SwissProt | 2021-04-01 | Q9ZW02 | 6.72e-13 |
| Acoerulea_Aqcoe7G225000.17 | SwissProt | 2021-04-01 | Q9ZW02 | 1.12e-12 |
| Acoerulea_Aqcoe7G225000.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Acoerulea_Aqcoe7G225000.12 | SwissProt | 2021-04-01 | Q9ZW02 | 7.85e-13 |
| Acoerulea_Aqcoe7G225000.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Acoerulea_Aqcoe7G225000.6 | SwissProt | 2021-04-01 | Q9ZW02 | 9.91e-13 |
| Acoerulea_Aqcoe7G225000.18 | SwissProt | 2021-04-01 | Q9ZW02 | 1.11e-12 |
| Acoerulea_Aqcoe7G225000.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
