GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe7G242900 [ Aqcoe7G242900]	Chr_07	22432181	22434051	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe7G242900.1 Aqcoe7G242900.1	High	No	453	OG0016890		Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -19.051 AMFE: -0.526 GC content %: 36.203
Acoerulea_Aqcoe7G242900.2 Aqcoe7G242900.2	High	No	336	OG0016890		Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -18.393 AMFE: -0.515 GC content %: 35.714

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).