GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe7G247600 [ Aqcoe7G247600]	Chr_07	23052082	23064061	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe7G247600.1 Aqcoe7G247600.1	High	No	953	OG0010257		Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -24.271 AMFE: -0.674 GC content %: 35.992
Acoerulea_Aqcoe7G247600.2 Aqcoe7G247600.2	High	No	900	OG0010257		Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -24.811 AMFE: -0.667 GC content %: 37.222
Acoerulea_Aqcoe7G247600.3 Aqcoe7G247600.3	High	No	752	OG0010257		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -24.694 AMFE: -0.645 GC content %: 38.298

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).