Acoerulea Aqcoe7G260200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe7G260200 [ Aqcoe7G260200] |
Chr_07 | 25705714 | 25717370 | v3.1 | Aquilegia coerulea (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Acoerulea_Aqcoe7G260200.1 Aqcoe7G260200.1 |
High | No | 1674 | OG0004868 | Get ORF Coding potential... Type: noncoding Potential: -1.292 Folding energies... MFEI: -19.797 AMFE: -0.610 GC content %: 32.437 | |
| Acoerulea_Aqcoe7G260200.2 Aqcoe7G260200.2 |
High | No | 846 | OG0004868 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -19.764 AMFE: -0.552 GC content %: 35.816 | |
| Acoerulea_Aqcoe7G260200.3 Aqcoe7G260200.3 |
High | No | 985 | OG0004868 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -20.579 AMFE: -0.576 GC content %: 35.736 | |
| Acoerulea_Aqcoe7G260200.4 Aqcoe7G260200.4 |
High | No | 964 | OG0004868 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -20.498 AMFE: -0.576 GC content %: 35.581 | |
| Acoerulea_Aqcoe7G260200.5 Aqcoe7G260200.5 |
High | No | 894 | OG0004868 | Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -20.358 AMFE: -0.565 GC content %: 36.018 | |
| Acoerulea_Aqcoe7G260200.6 Aqcoe7G260200.6 |
High | No | 915 | OG0004868 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -20.448 AMFE: -0.565 GC content %: 36.175 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
