GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe7G294100 [ Aqcoe7G294100]	Chr_07	31760390	31762331	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe7G294100.1 Aqcoe7G294100.1	High	No	1869	OG0026728		Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -31.610 AMFE: -0.775 GC content %: 40.770
Acoerulea_Aqcoe7G294100.2 Aqcoe7G294100.2	High	No	1817	OG0026728		Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -30.693 AMFE: -0.765 GC content %: 40.121

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).