GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Acoerulea_Aqcoe7G378900 [ Aqcoe7G378900]	Chr_07	39621665	39628996	v3.1	Aquilegia coerulea (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Acoerulea_Aqcoe7G378900.1 Aqcoe7G378900.1	High	No	425	OG0026735		Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -25.906 AMFE: -0.619 GC content %: 41.882
Acoerulea_Aqcoe7G378900.2 Aqcoe7G378900.2	High	No	395	OG0026735		Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -26.354 AMFE: -0.620 GC content %: 42.532

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).