Ahalleri ENSRNA050029470

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ahalleri_ENSRNA050029470
[ ENSRNA050029470]
FJVB01000069.1 172275 172495 v2.2 Arabidopsis halleri (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ahalleri_ENSRNA050029470-T1
ENSRNA050029470-T1
Low Yes 221 OG0002431
Coding potential...
Type: noncoding Potential: -0.885
Folding energies...
MFEI: -34.842 AMFE: -0.733
GC content
%: 47.511


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Ahalleri_ENSRNA050029470-T1  Rfam 14.6 MIR854 1.3e-44
Ahalleri_ENSRNA050029470-T1  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ahalleri_ENSRNA050029470.png