Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Ahalleri_g07054 [ g07054] |
FJVB01000013.1 | 885570 | 888724 | v2.2 | Arabidopsis halleri (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Ahalleri_g07054.t1 g07054.t1 |
Low | No | 1309 | OG0026806 | Get ORF Coding potential... Type: noncoding Potential: -0.170 Folding energies... MFEI: -24.920 AMFE: -0.620 GC content %: 40.183 | |
Ahalleri_g07054.t2 g07054.t2 |
Low | No | 1277 | OG0026806 | Get ORF Coding potential... Type: noncoding Potential: -0.296 Folding energies... MFEI: -25.067 AMFE: -0.623 GC content %: 40.251 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ahalleri_g07054.t2 | SwissProt | 2021-04-01 | C0LGR6 | 9.17e-6 |
Ahalleri_g07054.t1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
Ahalleri_g07054.t1 | SwissProt | 2021-04-01 | C0LGR6 | 6.3e-5 |