Ahypochondriacus AH000368

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Ahypochondriacus_AH000368
[ AH000368]
Scaffold_1 3524312 3531526 v2.1 Amaranthus hypocondriacus (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Ahypochondriacus_AH000368-RA
AH000368-RA
Low No 948 OG0081878
Coding potential...
Type: noncoding Potential: -0.884
Folding energies...
MFEI: -21.962 AMFE: -0.580
GC content
%: 37.869


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Ahypochondriacus_AH000368-RA  RepBase (RepeatMasker) 2014-01-31 RC/Helitron


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Ahypochondriacus_AH000368.png