Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Alyrata_AL1G21850 [ AL1G21850] |
scaffold_1 | 4323895 | 4326976 | v2.1 | Arabidopsis lyrata (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Alyrata_AL1G21850.t2 AL1G21850.t2 |
Low | No | 897 | OG0016974 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -25.574 AMFE: -0.632 GC content %: 40.468 | |
Alyrata_AL1G21850.t3 AL1G21850.t3 |
High | No | 1176 | OG0016974 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -25.383 AMFE: -0.652 GC content %: 38.946 | |
Alyrata_AL1G21850.t4 AL1G21850.t4 |
Low | No | 679 | OG0016974 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -22.312 AMFE: -0.587 GC content %: 37.997 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Alyrata_AL1G21850.t2 | SwissProt | 2021-04-01 | P0CB26 | 1.72e-5 |
Alyrata_AL1G21850.t4 | SwissProt | 2021-04-01 | P0CB26 | 1.06e-5 |