Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Alyrata_AL3G29490 [ AL3G29490] |
scaffold_3 | 7025949 | 7028037 | v2.1 | Arabidopsis lyrata (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Alyrata_AL3G29490.t1 AL3G29490.t1 |
High | No | 1415 | OG0016978 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -26.318 AMFE: -0.635 GC content %: 41.413 | |
Alyrata_AL3G29490.t2 AL3G29490.t2 |
High | No | 1221 | OG0016978 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -25.348 AMFE: -0.621 GC content %: 40.786 | |
Alyrata_AL3G29490.t3 AL3G29490.t3 |
High | No | 1296 | OG0016978 | Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -25.880 AMFE: -0.634 GC content %: 40.818 |