Alyrata AL4G31820

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Alyrata_AL4G31820
[ AL4G31820]
scaffold_4 16951445 16952564 v2.1 Arabidopsis lyrata (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Alyrata_AL4G31820.t1
AL4G31820.t1
High No 512 OG0002830
Coding potential...
Type: noncoding Potential: -0.779
Folding energies...
MFEI: -26.738 AMFE: -0.649
GC content
%: 41.211
Alyrata_AL4G31820.t2
AL4G31820.t2
High No 521 OG0002830
Coding potential...
Type: noncoding Potential: -0.722
Folding energies...
MFEI: -26.545 AMFE: -0.643
GC content
%: 41.267


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Alyrata_AL4G31820.png