Alyrata AL6G48590

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Alyrata_AL6G48590
[ AL6G48590]
scaffold_6 22730745 22731204 v2.1 Arabidopsis lyrata (Phytozome 13)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Alyrata_AL6G48590.t1
AL6G48590.t1
High No 349 OG0090816
Coding potential...
Type: noncoding Potential: -1.233
Folding energies...
MFEI: -18.453 AMFE: -0.570
GC content
%: 32.378


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Alyrata_AL6G48590.png