Atauschii AET0Gv20008000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET0Gv20008000 [ AET0Gv20008000] |
Super_scaffold_652 | 1154393 | 1157811 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET0Gv20008000.1 AET0Gv20008000.1 |
High | No | 2243 | OG0004617 | Get ORF Coding potential... Type: noncoding Potential: -1.306 Folding energies... MFEI: -29.273 AMFE: -0.651 GC content %: 44.984 | |
| Atauschii_AET0Gv20008000.11 AET0Gv20008000.11 |
High | No | 290 | OG0015775 | Get ORF Coding potential... Type: noncoding Potential: -1.361 Folding energies... MFEI: -38.069 AMFE: -0.646 GC content %: 58.966 | |
| Atauschii_AET0Gv20008000.2 AET0Gv20008000.2 |
High | No | 2637 | OG0004617 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -28.479 AMFE: -0.652 GC content %: 43.648 | |
| Atauschii_AET0Gv20008000.3 AET0Gv20008000.3 |
High | No | 255 | OG0009688 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -45.176 AMFE: -0.686 GC content %: 65.882 | |
| Atauschii_AET0Gv20008000.4 AET0Gv20008000.4 |
High | No | 1153 | OG0004617 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -33.729 AMFE: -0.658 GC content %: 51.258 | |
| Atauschii_AET0Gv20008000.8 AET0Gv20008000.8 |
High | No | 1746 | OG0004617 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -30.615 AMFE: -0.664 GC content %: 46.105 | |
| Atauschii_AET0Gv20008000.9 AET0Gv20008000.9 |
High | No | 1351 | OG0004617 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -32.095 AMFE: -0.656 GC content %: 48.927 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
