Atauschii AET0Gv20013500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET0Gv20013500 [ AET0Gv20013500] |
jcf7190000000034 | 56820 | 63946 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET0Gv20013500.10 AET0Gv20013500.10 |
High | No | 1342 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -32.690 AMFE: -0.700 GC content %: 46.721 | |
| Atauschii_AET0Gv20013500.11 AET0Gv20013500.11 |
High | No | 3056 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -28.734 AMFE: -0.700 GC content %: 41.067 | |
| Atauschii_AET0Gv20013500.12 AET0Gv20013500.12 |
High | No | 2111 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -30.947 AMFE: -0.705 GC content %: 43.913 | |
| Atauschii_AET0Gv20013500.13 AET0Gv20013500.13 |
High | No | 1105 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -31.357 AMFE: -0.678 GC content %: 46.244 | |
| Atauschii_AET0Gv20013500.14 AET0Gv20013500.14 |
High | No | 1252 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -33.586 AMFE: -0.696 GC content %: 48.243 | |
| Atauschii_AET0Gv20013500.15 AET0Gv20013500.15 |
High | No | 2066 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -31.152 AMFE: -0.703 GC content %: 44.337 | |
| Atauschii_AET0Gv20013500.16 AET0Gv20013500.16 |
High | No | 1784 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -28.643 AMFE: -0.686 GC content %: 41.760 | |
| Atauschii_AET0Gv20013500.2 AET0Gv20013500.2 |
High | No | 3141 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -29.726 AMFE: -0.700 GC content %: 42.439 | |
| Atauschii_AET0Gv20013500.3 AET0Gv20013500.3 |
High | No | 2196 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -31.562 AMFE: -0.702 GC content %: 44.945 | |
| Atauschii_AET0Gv20013500.5 AET0Gv20013500.5 |
Low | No | 2241 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -30.469 AMFE: -0.692 GC content %: 44.043 | |
| Atauschii_AET0Gv20013500.6 AET0Gv20013500.6 |
Low | No | 1208 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -34.586 AMFE: -0.692 GC content %: 50.000 | |
| Atauschii_AET0Gv20013500.7 AET0Gv20013500.7 |
High | No | 2190 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -30.594 AMFE: -0.702 GC content %: 43.607 | |
| Atauschii_AET0Gv20013500.8 AET0Gv20013500.8 |
High | No | 2342 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -29.257 AMFE: -0.690 GC content %: 42.400 | |
| Atauschii_AET0Gv20013500.9 AET0Gv20013500.9 |
High | No | 1303 | OG0000859 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -32.563 AMFE: -0.693 GC content %: 46.969 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET0Gv20013500.5 | SwissProt | 2021-04-01 | P14381 | 6.66e-4 |
| Atauschii_AET0Gv20013500.6 | SwissProt | 2021-04-01 | P14381 | 2.17e-4 |
| Atauschii_AET0Gv20013500.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET0Gv20013500.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
