Atauschii AET0Gv20117000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET0Gv20117000 [ AET0Gv20117000] |
jcf7190000162233 | 1 | 1779 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET0Gv20117000.10 AET0Gv20117000.10 |
High | No | 743 | OG0003645 | Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -32.046 AMFE: -0.709 GC content %: 45.222 | |
| Atauschii_AET0Gv20117000.11 AET0Gv20117000.11 |
High | No | 836 | OG0003645 | Get ORF Coding potential... Type: noncoding Potential: -0.978 Folding energies... MFEI: -30.706 AMFE: -0.701 GC content %: 43.780 | |
| Atauschii_AET0Gv20117000.12 AET0Gv20117000.12 |
High | No | 682 | OG0003645 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -31.202 AMFE: -0.709 GC content %: 43.988 | |
| Atauschii_AET0Gv20117000.13 AET0Gv20117000.13 |
High | No | 578 | OG0003645 | Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -31.557 AMFE: -0.691 GC content %: 45.675 | |
| Atauschii_AET0Gv20117000.3 AET0Gv20117000.3 |
High | No | 1188 | OG0003645 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -29.015 AMFE: -0.675 GC content %: 43.013 | |
| Atauschii_AET0Gv20117000.4 AET0Gv20117000.4 |
High | No | 340 | OG0003645 | Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -20.853 AMFE: -0.506 GC content %: 41.176 | |
| Atauschii_AET0Gv20117000.8 AET0Gv20117000.8 |
High | No | 563 | OG0003645 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -28.099 AMFE: -0.625 GC content %: 44.938 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
