GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET0Gv20142400 [ AET0Gv20142400]	jcf7190000162604	709	3943	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET0Gv20142400.1 AET0Gv20142400.1	High	No	871	OG0015787		Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -39.300 AMFE: -0.676 GC content %: 58.094
Atauschii_AET0Gv20142400.10 AET0Gv20142400.10	High	No	477	OG0015787		Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -37.275 AMFE: -0.585 GC content %: 63.732
Atauschii_AET0Gv20142400.4 AET0Gv20142400.4	High	No	760	OG0015787		Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -34.592 AMFE: -0.732 GC content %: 47.237

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).