Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20011200 [ AET1Gv20011200] |
1D | 4113684 | 4203556 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20011200.1 AET1Gv20011200.1 |
Low | No | 479 | OG0067697 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -36.159 AMFE: -0.651 GC content %: 55.532 | |
Atauschii_AET1Gv20011200.4 AET1Gv20011200.4 |
High | No | 1135 | OG0024200 | Get ORF Coding potential... Type: noncoding Potential: -1.393 Folding energies... MFEI: -27.304 AMFE: -0.636 GC content %: 42.907 | |
Atauschii_AET1Gv20011200.8 AET1Gv20011200.8 |
High | No | 630 | OG0024200 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -29.365 AMFE: -0.642 GC content %: 45.714 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20011200.1 | SwissProt | 2021-04-01 | Q9SHI2 | 8.25e-4 |