GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20017400 [ AET1Gv20017400]	1D	4963067	4965473	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20017400.1 AET1Gv20017400.1	High	No	2399	OG0015792		Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -27.040 AMFE: -0.652 GC content %: 41.476
Atauschii_AET1Gv20017400.2 AET1Gv20017400.2	High	No	1925	OG0015792		Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -26.395 AMFE: -0.649 GC content %: 40.675
Atauschii_AET1Gv20017400.3 AET1Gv20017400.3	High	No	1661	OG0015792		Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -28.862 AMFE: -0.648 GC content %: 44.551

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).