Atauschii AET1Gv20018800
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20018800 [ AET1Gv20018800] |
1D | 5088288 | 5097852 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20018800.1 AET1Gv20018800.1 |
High | No | 488 | OG0015793 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -29.898 AMFE: -0.598 GC content %: 50.000 | |
| Atauschii_AET1Gv20018800.10 AET1Gv20018800.10 |
High | No | 683 | OG0015793 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -23.836 AMFE: -0.594 GC content %: 40.117 | |
| Atauschii_AET1Gv20018800.11 AET1Gv20018800.11 |
High | No | 364 | OG0067710 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -21.223 AMFE: -0.568 GC content %: 37.363 | |
| Atauschii_AET1Gv20018800.2 AET1Gv20018800.2 |
Low | No | 1182 | OG0004622 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -25.601 AMFE: -0.627 GC content %: 40.863 | |
| Atauschii_AET1Gv20018800.3 AET1Gv20018800.3 |
Low | No | 1179 | OG0004622 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -25.522 AMFE: -0.626 GC content %: 40.797 | |
| Atauschii_AET1Gv20018800.4 AET1Gv20018800.4 |
High | No | 719 | OG0004622 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -27.944 AMFE: -0.596 GC content %: 46.871 | |
| Atauschii_AET1Gv20018800.5 AET1Gv20018800.5 |
High | No | 494 | OG0015793 | Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -28.138 AMFE: -0.594 GC content %: 47.368 | |
| Atauschii_AET1Gv20018800.6 AET1Gv20018800.6 |
High | No | 676 | OG0004622 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -26.553 AMFE: -0.630 GC content %: 42.160 | |
| Atauschii_AET1Gv20018800.8 AET1Gv20018800.8 |
High | No | 701 | OG0004622 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -26.462 AMFE: -0.625 GC content %: 42.368 | |
| Atauschii_AET1Gv20018800.9 AET1Gv20018800.9 |
High | No | 508 | OG0004622 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -27.480 AMFE: -0.610 GC content %: 45.079 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20018800.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET1Gv20018800.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
