Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20034000 [ AET1Gv20034000] |
1D | 7575959 | 7582354 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20034000.11 AET1Gv20034000.11 |
High | No | 1011 | OG0002838 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -32.295 AMFE: -0.647 GC content %: 49.951 | |
Atauschii_AET1Gv20034000.20 AET1Gv20034000.20 |
Low | No | 240 | OG0067728 | Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -25.917 AMFE: -0.641 GC content %: 40.417 | |
Atauschii_AET1Gv20034000.8 AET1Gv20034000.8 |
High | No | 530 | OG0002838 | Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -30.642 AMFE: -0.588 GC content %: 52.075 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20034000.20 | SwissProt | 2021-04-01 | Q8GRL7 | 2.95e-11 |