Atauschii AET1Gv20034400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20034400 [ AET1Gv20034400] |
1D | 7596320 | 7601178 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20034400.10 AET1Gv20034400.10 |
High | No | 1249 | OG0002839 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -24.107 AMFE: -0.590 GC content %: 40.833 | |
| Atauschii_AET1Gv20034400.3 AET1Gv20034400.3 |
Low | Yes | 942 | OG0002839 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -36.507 AMFE: -0.800 GC content %: 45.648 | |
| Atauschii_AET1Gv20034400.4 AET1Gv20034400.4 |
Low | No | 1050 | OG0002839 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -32.210 AMFE: -0.635 GC content %: 50.762 | |
| Atauschii_AET1Gv20034400.5 AET1Gv20034400.5 |
High | No | 715 | OG0002839 | Get ORF Coding potential... Type: noncoding Potential: -1.356 Folding energies... MFEI: -25.427 AMFE: -0.608 GC content %: 41.818 | |
| Atauschii_AET1Gv20034400.6 AET1Gv20034400.6 |
High | No | 1348 | OG0002839 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -26.543 AMFE: -0.593 GC content %: 44.733 | |
| Atauschii_AET1Gv20034400.7 AET1Gv20034400.7 |
High | No | 1043 | OG0002839 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -27.009 AMFE: -0.603 GC content %: 44.775 | |
| Atauschii_AET1Gv20034400.8 AET1Gv20034400.8 |
Low | Yes | 1384 | OG0002839 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -28.201 AMFE: -0.701 GC content %: 40.246 | |
| Atauschii_AET1Gv20034400.9 AET1Gv20034400.9 |
High | No | 1374 | OG0002839 | Get ORF Coding potential... Type: noncoding Potential: -1.369 Folding energies... MFEI: -24.643 AMFE: -0.585 GC content %: 42.140 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20034400.3 | Rfam | 14.6 | MIR1122 | 1.1e-20 |
| Atauschii_AET1Gv20034400.8 | Rfam | 14.6 | MIR1122 | 1.3e-17 |
| Atauschii_AET1Gv20034400.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET1Gv20034400.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET1Gv20034400.3 | SwissProt | 2021-04-01 | Q69TI0 | 5.19e-7 |
| Atauschii_AET1Gv20034400.4 | SwissProt | 2021-04-01 | Q69TI0 | 6.69e-7 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
