GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20058000 [ AET1Gv20058000]	1D	12422404	12423679	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20058000.1 AET1Gv20058000.1	High	No	765	OG0015799		Get ORF Coding potential... Type: noncoding Potential: -0.133 Folding energies... MFEI: -31.216 AMFE: -0.608 GC content %: 51.373
Atauschii_AET1Gv20058000.2 AET1Gv20058000.2	High	No	687	OG0015799		Get ORF Coding potential... Type: noncoding Potential: -0.069 Folding energies... MFEI: -31.776 AMFE: -0.610 GC content %: 52.111
Atauschii_AET1Gv20058000.3 AET1Gv20058000.3	Low	No	512	OG0015799		Get ORF Coding potential... Type: coding Potential: 0.040 Folding energies... MFEI: -30.645 AMFE: -0.594 GC content %: 51.562

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).